SADB: Sense and Antisense DataBase

Contents

• Browse the sense and antisense pairs.
• Search your interest sense and antisense pairs by the accesion number of transcripts; ex. E030022F06

Credits

• Thanks to the Genomics Institute of the Novartis Research Foundation (GNF) for the expression data; see Su, A.I. et al. (2004) A gene atlas of the mouse and human protein-encoding transcriptomes, and the UCSC Genome Bioinformatics group for the relationship between the GNF expression and the transcripts; see Karolchik, D. et al. (2003) The UCSC Genome Browser Database.
Also thanks to Shimokawa, K. for the latest AbsoluteREAD expression data; see Kodzius, R. et al. (2004) Absolute expression values for mouse transcripts: re-annotation of the READ expression database by the use of CAGE and EST sequence tags.

Downloads

• sa_transcript.txt; cis sense-antisense transcript pairs. Some of these are no-exon overlap.
  • Accession (+ strand)
  • Accession (- strand)
  • Overlap Type (C; convergent = tail-to-tail, D; divergent = head-to-head, F; full-overlap)
  • Chromosome
  • Minimum position of transcript pair
  • Minimum position of overlapping region
  • Maximum position of overlapping region
  • Maximum position of transcript pair
• sa_exon_transcript.txt; cis natural sense-antisense pairs. All of these are exon overlap.
  • Accession (+ strand)
  • Accession (- strand)
  • Chromosome
  • Minimum position of exon pair
  • Minimum position of overlapping region
  • Maximum position of overlapping region
  • Maximum position of exon pair

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